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Landmark or Region: Examples: SL2.40ch00, SL2.40ch01, SL2.40ch02, SL2.40ch03, SL2.40ch04, SL2.40ch05, SL2.40ch06, SL2.40ch07, SL2.40ch08, SL2.40ch09, SL2.40ch10, SL2.40ch11, SL2.40ch12.	Annotate Restriction Sites Download Alignments Download Protein Sequence File
Data Source S.lycopersicum 2.40 public access	Scroll/Zoom:     Show 63.03 Mbp Show 2 Mbp Show 1 Mbp Show 500 kbp Show 200 kbp Show 120 kbp Show 100 kbp Show 50 kbp Show 40 kbp Show 20 kbp Show 10 kbp Show 5 kbp Show 2 kbp Show 1 kbp Show 200 bp Show 100 bp     Flip

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 Tracks

 Tracks

 

 AilsaCraig(Coverage Plot)

 AilsaCraig(Coverage Plot)

 All on All off 

3' end sequencing of tomato transcripts	Breaker fruit	Immature green fruit
5' end sequencing of tomato transcripts	Fully ripe fruit	Immature green fruit
5' end sequencing of tomato transcripts	Fully ripe fruit	Mature green fruit
5' end sequencing of tomato transcripts	Fully ripe fruit	Mature green fruit
Breaker fruit	Fully ripe fruit	Mature green fruit
Breaker fruit	Immature green fruit	Mature green fruit
Breaker fruit	Immature green fruit

 AilsaCraig(Reads)

 AilsaCraig(Reads)

 All on All off 

3' end sequencing of tomato transcripts	Breaker fruit	Immature green fruit
5' end sequencing of tomato transcripts	Fully ripe fruit	Immature green fruit
5' end sequencing of tomato transcripts	Fully ripe fruit	Mature green fruit
5' end sequencing of tomato transcripts	Fully ripe fruit	Mature green fruit
Breaker fruit	Fully ripe fruit	Mature green fruit
Breaker fruit	Immature green fruit	Mature green fruit
Breaker fruit	Immature green fruit

 Annotation

 Annotation

 All on All off 

iTAG Annotation 2.3

iTAG Annotation 2.3 Infernals

RefSeq Annotation 2.3

 DNA

 DNA

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6-frame translation

DNA/GC Content

 EST Collections (GenomeThreader)

 EST Collections (GenomeThreader)

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EST: Capsicum annumm (CAPAN)	EST: Nicotiana sylvestris (NICSY)	EST: Solanum Nicotiana tabacum (TOBAC)
EST: Capsicum chinense (CAPCH)	EST: Petunia x hybrida (PETHY)	EST: Solanum pennelli (SOLPN)
EST: Coffea arabica (COFAR)	EST: Solanum chacoense (SOLCH)	EST: Solanum phureja (SOLPH)
EST: Coffea canephora (COFCA)	EST: Solanum habrochaites (SOLHA)	EST: Solanum torvum (TORVUM)
EST: Nicotiana attenuata (NICAT)	EST: Solanum lycopersicum (SOLLC)	EST: Solanum tuberosum (SOLTU)
EST: Nicotiana benthamiana (NICBE)	EST: Solanum lycopersicum x Pimpinellifolium (SOLlycxpim)	Solanum peruvianum (SOLPE)
EST: Nicotiana langsdorffii x Nicotiana sanderae (NICLS)	EST: Solanum melongena (SOLME)

 RNA-Seq (Overview)

 RNA-Seq (Overview)

 All on All off 

All Ailsa craig Libraries Combined (Reads)	All Heinz Libraries Combined (Reads)	All pimpinellifolium Libraries Combined (Reads)
All Ailsa craig Libraries Combined (xy Plot)	All Heinz Libraries Combined (xy Plot)	All pimpinellifolium Libraries Combined (xy Plot)

 RNA-Seq Heinz(Coverage Plot)

 RNA-Seq Heinz(Coverage Plot)

 All on All off 

1 cm Fruit (Replicate 1)	Breaker Fruit (Replicate 2)	Leaf (Replicate 1)
1 cm Fruit (Replicate 2)	Flower (Replicate 1)	Leaf (Replicate 2)
2 cm Fruit (Replicate 1)	Flower (Replicate 2)	Mature Green Fruit (Replicate 1)
2 cm Fruit (Replicate 2)	Flower Bud (Replicate 1)	Mature Green Fruit (Replicate 2)
3 cm Fruit (Replicate 1)	Flower Bud (Replicate 2)	Root (Replicate 1)
3 cm Fruit (Replicate 2)	Fruit at 10 days (Replicate 1)	Root (Replicate 2)
Breaker Fruit (Replicate 1)	Fruit at 10 days (Replicate 2)

 RNA-Seq Heinz(Reads)

 RNA-Seq Heinz(Reads)

 All on All off 

1 cm Fruit (Replicate 1)	Breaker Fruit (Replicate 2)	Leaf (Replicate 1)
1 cm Fruit (Replicate 2)	Flower (Replicate 1)	Leaf (Replicate 2)
2 cm Fruit (Replicate 1)	Flower (Replicate 2)	Mature Green Fruit (Replicate 1)
2 cm Fruit (Replicate 2)	Flower Bud (Replicate 1)	Mature Green Fruit (Replicate 2)
3 cm Fruit (Replicate 1)	Flower Bud (Replicate 2)	Root (Replicate 1)
3 cm Fruit (Replicate 2)	Fruit at 10 days (Replicate 1)	Root (Replicate 2)
Breaker Fruit (Replicate 1)	Fruit at 10 days (Replicate 2)

 TC Collections (GenomeThreader)

 TC Collections (GenomeThreader)

 All on All off 

TC: Capsicum annumm (CAPAN)	TC: Nicotiana sylvestris (NICSY)	TC: Solanum melongena (SOLME)
TC: Capsicum chinense (CAPCH)	TC: Petunia x hybrida (PETHY)	TC: Solanum Nicotiana tabacum (TOBAC)
TC: Coffea arabica (COFAR)	TC: Solanum chacoense (SOLCH)	TC: Solanum pennelli (SOLPN)
TC: Coffea canephora (COFCA)	TC: Solanum habrochaites (SOLHA)	TC: Solanum phureja (SOLPH)
TC: Nicotiana benthamiana (NICBE)	TC: Solanum lycopersicum (SOLLC)	TC: Solanum torvum (TORVUM)
TC: Nicotiana langsdorffii x Nicotiana sanderae (NICLS)	TC: Solanum lycopersicum x Pimpinellifolium (SOLlycxpim)	TC: Solanum tuberosum (SOLTU)

 Transcript Indices

 Transcript Indices

 All on All off 

TI: Solanum lycopersiucm DanaFarber

TI: Solanum lycopersiucm PlantGDB

TI: Solanum lycopersiucm Solgenomics

 Pimpi(Coverage Plot)

 Pimpi(Coverage Plot)

 All on All off 

Breaker fruit	fruit at 5 days after the breaker stage	Leaf
Breaker fruit	Immature green fruit	Leaf
fruit at 5 days after the breaker stage	Immature green fruit

 Pimpi(Reads)

 Pimpi(Reads)

 All on All off 

Breaker fruit	fruit at 5 days after the breaker stage	Leaf
Breaker fruit	Immature green fruit	Leaf
fruit at 5 days after the breaker stage	Immature green fruit

 Analysis

 Analysis

 All on All off 

Restriction Sites

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