| Source | # ESTs | # non redundant ESTs | # Gene Indices | # Transcript Indices | # Contigs | # Singletons |
| Solanum lycopersicum | 250552 | 190763 | 44759 | 45634 | 17629 | 28005 |
| Solanum pennellii | 8346 | 6888 | 3863 | 3870 | 730 | 3140 |
| Solanum habrochaites | 8000 | 7868 | 4101 | 4110 | 907 | 3203 |
| Solanum lycopersicum X Solanum pimpinellifolium | 1008 | 979 | 744 | 744 | 94 | 650 |
| All | 267906 | 206497 | 53467 | 54358 | 19360 | 34998 |
- Gene indices:
- Are usually created by grouping overlapping EST sequences into clusters. Each cluster corresponds to a unique gene. A cluster can consist in one or multiple contigs. In the case of a cluster of multiple contigs each contig share similarities with the others in the cluster because of i) putative alternative transcription; ii) paralogy; iii) domain sharing.
- Contigs:
- Are consensus sequences generated from multiple sequence alignments of ESTs (assembling process).
- Singletons:
- Are ESTs that are not contained in an assembly. These ESTs during the clustering process did not meet the match criteria (see Processing Protocol) to be clustered with any other EST in the collection of ESTs.
- Transcript indices:
- Singletons + Contigs. They represent the total number of predicted transcripts.
Dr. Nunzio D'Agostino and Mario Aversano: Database designers and webmasters Dr. Maria Luisa Chiusano: Project manager Contact us: chiusano@unina.it Acknowledgements: Tomatest db is supported by AGRO-NANOTECH project, Italian Ministry of Agriculture (MiPAF)
Disclaimer: whilst every effort has been taken to ensure the accuracy of the information and the reliability of the analyses available from this site, neither the University 'Federico II' nor any of CAB group employees, makes any warranty, express or implied, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness of any information, or represents that its use would not infringe privately owned rights.