ACCESS TO VITIS GENOME DATA
In the COST ACTION FA1106 we consider as OFFICIAL the Genome Assembly 12x, availabe at Genoscope and CRIBI website.
The annotation considered as OFFICIAL is CRIBI V1, availabe here.
Below, all the websites with vitis annotation and corresponding versions are shown.
An overview of the services available on each site is provided too.
GENOME
ASSEMBLY
AVAILABLE
ANNOTATIONSERVICES

 

GENOME ASSEMBLY

CRIBI V1
(considered official by COST)
prediction on 12x genome assembly

GENOSCOPE V2=CRIBI V0
(previous prediction on
12x genome assembly)

GENOSCOPE V1
(prediction on 8x
genome assembly)

Query by
Functional
Annotation

RNA-seq
mapped on
the genome

EST mapped
on the genome

PROBES mapped
on the genome

CRIBI

12x

yes

yes*

no

yes

yes

yes

no

Genoscope

12x/8x

no

yes

yes

yes

no

yes

no

URGI

12x/8x

yes

yes

yes

no

no

yes

Qiagen

IGA

12x

yes

yes*

no

no

no

no

no

PlantGDB

12x

no

yes

no

yes

no

yes

Affymetrix

Gramene

12x

yes

no

no

yes

no

no

no

Phytozome

12x

no

yes

no

no

no

no

no

*The gene annotation is CRIBI V0, equivalent to the GENOSCOPE V2, but the gene IDs are different

Cribi V1 : genome annotation based on the genome assembly 12x, made by Cribi
Genoscope V2/Cribi V0 : genome annotation based on the genome assembly 12x, made by Genoscope and called V0 at Cribi
Genoscope V1 : gene annotation based on the genome assembly 8x