Welcome to the access to vitis genome data page

ACCESS TO VITIS GENOME DATA

In the COST ACTION FA1106 we consider as OFFICIAL the Genome Assembly 12x, availabe at Genoscope and CRIBI website.
The annotation considered as OFFICIAL is CRIBI V1, availabe here.
Below, all the websites with vitis annotation and corresponding versions are shown.
An overview of the services available on each site is provided too.

	GENOME ASSEMBLY AVAILABLE	ANNOTATION			SERVICES
	GENOME ASSEMBLY	CRIBI V1 (considered official by COST) prediction on 12x genome assembly	GENOSCOPE V2=CRIBI V0 (previous prediction on 12x genome assembly)	GENOSCOPE V1 (prediction on 8x genome assembly)	Query by Functional Annotation	RNA-seq mapped on the genome	EST mapped on the genome	PROBES mapped on the genome
CRIBI	12x	yes	yes*	no	yes	yes	yes	no
Genoscope	12x/8x	no	yes	yes	yes	no	yes	no
URGI	12x/8x	yes	yes	yes	no	no	yes	Qiagen
IGA	12x	yes	yes*	no	no	no	no	no
PlantGDB	12x	no	yes	no	yes	no	yes	Affymetrix
Gramene	12x	yes	no	no	yes	no	no	no
Phytozome	12x	no	yes	no	no	no	no	no

*The gene annotation is CRIBI V0, equivalent to the GENOSCOPE V2, but the gene IDs are different

Cribi V1 : genome annotation based on the genome assembly 12x, made by Cribi
Genoscope V2/Cribi V0 : genome annotation based on the genome assembly 12x, made by Genoscope and called V0 at Cribi
Genoscope V1 : gene annotation based on the genome assembly 8x